I didn't find anything in the forums that would address the isue I have. I need the shipping to be based on payment options. Sending COD is way more expensive here than sending on an invoice and I really need it. So unfortunately I had to choose only 1 payment method.
Bakery is flawed in this, because it allows the customer to choose the payment option at the end, instead of before (or at the same time as) shipping options, therefore there is no way to change the summary because we don't know what payment the customer chose until the last moment.
I'm sadly thinking of using another system before this is resolved.